Scaffold Ga0137396_10004057

Overview

Basic Information

• Taxon OID: 3300012918
• Scaffold ID: Ga0137396_10004057
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8346
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F012762	Metagenome	277	Y
F014110	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_1000405713	F012762	N/A	DPSLGTVDNFPTVLHARASFSFDINPESLQKALVSALASLRTNPKPQEITVADRDGYLKGQLVFRLGIGNGDGFDVLDSKEEERVLHRIENRGSFNTLDLAIQLHYSVNDSRRHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIRLIIQELNVELTRDRYGQIELEAVDIT*
Ga0137396_100040574	F006299	GAG	LSVSTELVPKETPEVVEFNQLKALSAAEALKELVKEFGIVYVTALTRQGCSGCETQKPLFKTLAEKMSLENHAKVRFRSVHVNYENGDKKESWNSKRIFAHAAYPTYTIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELADFYKTEAENAPGLTPEKL*
Ga0137396_100040575	F014110	AGGA	VDLAKLRGKTGPVVDFLREHVMSVKGRVSTKGTQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGILEIVPPHIATHPKLDEATTPPAAATMPYLFPGTPTPVSTAKRRKKNA*