Scaffold Ga0137396_10001303

Overview

Basic Information

• Taxon OID: 3300012918
• Scaffold ID: Ga0137396_10001303
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13012
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019298	Metagenome	230	N
F022381	Metagenome	214	N
F034529	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_1000130310	F034529	GGGGG	MKLVTLFKKSIKMPPEYVPGRCNIGARGRAIRLATGLGIVAVFGGFDVLALKSVPAVFRLLLFVPFYVGLLAALEGTMSFCVLHASRGTFDLHEPTGMAIGKSGTKMEVGSEEWKRLDRRKARLMHVEALLGALVLAGLLAFA*
Ga0137396_1000130314	F022381	N/A	MIGVTLTMGLIYYSLRTLFLFKRNVAARAWIYICLSAIFSSMGVVAFLIESIVPMGLLPVGGVLETVGASFLLLGLRKNFLFWASKDHFA*
Ga0137396_100013034	F019298	GAGG	MTLTAQRLLDTTPRWLSITLVSTSSALLISGIGFVLNLLNPFTITPFTLMLHLIWAIVVSSWVLNLKVKLPGEKKALLAVGVAVAAGSMWGAIQQWIAYLQAGIVNDITLVAGAVVMDAVGGLVVYILYHLNILGRKIGSNGSRTSPGSVNTSPST*