Scaffold Ga0137396_10000547

Overview

Basic Information

• Taxon OID: 3300012918
• Scaffold ID: Ga0137396_10000547
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18145
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F004152	Metagenome	450	Y
F036188	Metagenome / Metatranscriptome	170	Y
F054745	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137396_1000054719	F000186	N/A	MEHELALKLQDDRVNYLTQVEIPVTTADFYFPQEPRPLIVFVDGPVHLKTAQMMKDEELRTLLRKRGYRILELSYSSYTDKKRDELYREIMLRLGK*
Ga0137396_100005472	F036188	N/A	LSDTISPEVLREARTRQQDERWLSSASTPVLRRYRGKYVAVKNRKILASSPTMKGLYEKIDKLNPGMVLITRVETLYPLIYA*
Ga0137396_1000054721	F054745	N/A	LIVFVDGPVHLKTAQMMKDEDLRSLLRKRGYRILELSYSSYTDKKRDELYREILNGLGK*
Ga0137396_1000054727	F004152	GGA	LTKIVADDLQKDEVSSLVEYMMAVSSGQIAQRKKLVEVTGLSNTKIKFLVKKFLYSRHLPGYGLLETAGNFEIVRLKPEEKRTEHHETLSPTMLPESIGLGGLPRWGKPSEMIEWEGRPPPMKKERYKKQ*