NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137395_10059325

Scaffold Ga0137395_10059325


Overview

Basic Information
Taxon OID3300012917 Open in IMG/M
Scaffold IDGa0137395_10059325 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2436
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025536Metagenome / Metatranscriptome201Y
F042486Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0137395_100593251F025536AGGVSASAPALAKQSHPALAMRLADPAATLAYVSFLFGLLLVVFPVSFPRIIVQNWQNARLTPIVILFTVSLNLALYLGVAHQRSSKPGILAAACLGSVPVFLLAGLNFLLQATIAHTLSGNIPNALARVDEEILAHTYFALIAAIFGPFLLIRLGQQFRKTDP
Ga0137395_100593252F042486N/AMVALGIHELTADWASAKWLLWIGLYLSLGLVVPWSMTRAWAHQHHSPLQPRLKQVFQNGELGLVSLMLAISVIWDLQKSQYTSYTIALGSVFLATTGIMAGAVWIESYCRRSTGTRFRPDRAWRDSRNLTLLVFSLAIVTEILLDRFGKVTAL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.