Scaffold Ga0137395_10004130

Overview

Basic Information

• Taxon OID: 3300012917
• Scaffold ID: Ga0137395_10004130
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7319
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F019190	Metagenome / Metatranscriptome	231	Y
F030676	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137395_100041303	F000440	N/A	MRMQTKCTRAQRAAEYLRRVAALTGAKEDDDGTYHLTAGGTHFLVDAKFVRVIAPRSESTCFSVAADLDMPSAEVVASALLQLKNNARLFEKWRDRPAHAFKANGKMFRDIYQLTRDET*
Ga0137395_100041304	F030676	N/A	MTPAILSVIAFLALFAWRFVFAGPRRRPLAREIAAPPQQHTNILEQGLHILDLVGVAVIPDNRPENGSNAAKPITPKDCAKTYLRRIVALTAATRMFNCYVLDVGTTRFHVRDRYVRRMRNVTDPKCEYEETCFYSAQKEMPKSEHIATALLLLKNNPALFDKWAAQSGAFKADGEAFRSRALIHFR*
Ga0137395_100041305	F000217	AGGAG	MTAKIQTFSSHGDTTLLEYDPATADMEEVNRVIAEYEAKTGAQPFDMATGERLRKVTREQNEVLMVHPIAGG*
Ga0137395_100041308	F019190	N/A	MPDTINTGTRLIEEGALLPESARSESEPWTSFYIAGEIIRELRKAHENKQVSVAATKDDVRKAA*