Scaffold Ga0137395

Basic Information
Taxon OID	3300012917 Open in IMG/M
Scaffold ID	Ga0137395_10002977 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012917 Open in IMG/M

Scaffold ID

Ga0137395_10002977 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8320
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8320

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F025001	Metagenome / Metatranscriptome	203	Y
F075920	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137395_1000297711	F013999	AGGAGG	MFKVISRKRRIELLRFARAIGSGIGMLLLASPAFAQIGGDRVSSFLSNTLNYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG*
Ga0137395_1000297713	F025001	GAGG	MIPVSTLHLVAALIGALAVMVLALAVFLPQAAAARHRFESGTEDEPKLSSLSARVPVSEIRNGLIVRRDGSFCAGWECSGVATQFADAERLEAVSSALDAFIKGIRHPEIELQFRYLIDYETPRVLEERKALGNCTSSPATWLEENRLSFWRSAIGAGHMRSIRLLALLSWKPNHTWETRSAASRFAAALWQGLVQEGFGKFASVLRAALKETRTRALVQRNREEHNRLVAQFNQVLETYRMGLVAITPVRRLSEPEVIELV
Ga0137395_100029772	F016649	AGGTGG	MRKKCSVLTLILCLTIIETVGCERLSRPNISGVWKGTIQASAAGGKEKWQGPAELTLNQNGDALTGTIVFTHPQAGRVQVPISSGVVSKDAVTFSGQSQFPLGGSIEITFHGRVSGTSLSGTTDMTSRGLFGTVANSGPLSLTKQ*
Ga0137395_100029773	F075920	N/A	MKHYSSETSTKTLEASGLFVGTPVVPTMAAEGRSLFRLNAVDRRGRKIEPAVLEAAEGIYSRAFEHGLRLLGDPAVVTTALEEVAAIVSRAVRTKEPRGDPVQVRDLRAYLFRAFLRHVNHLKRKEVLVVGLSETARKSEPPWADASRELSNKILLDEVLAQCDFIAQDMAWRRMQGFSWEEVGKVHGLSAHAAEARFSHALQQARERLKI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137395_10002977

Overview

Ecosystem & Geography

Associated Families

Sequences