Scaffold Ga0157306_10019476

Overview

Basic Information

• Taxon OID: 3300012912
• Scaffold ID: Ga0157306_10019476
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004566	Metagenome / Metatranscriptome	433	Y
F030490	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157306_100194761	F004566	N/A	IATFESDPSTVDQAIEMVRSEVESGETPEGLEGAKMLMLINRETGKGLGVTLFESEEAMRRGDEALNAMNPGGTERRTSVEFYEVPVQTVS*
Ga0157306_100194762	F030490	AGG	VLQGHLERLGVSSFWLRSALDAIRYCEQGDFFQPVFSVAGPAPARSVVALMRLEPFVRAEIDWTISPSESPFWVGSVGELQDELFDATASRFLNLYWSEDNPSVRPDLEAAFRDMVSFAEDELPGATPAQNEDARHLLSALGSGGYVWRVAESTARTTDLNLRADLVKEVEAVVASFPDSEPEERLLAWAATECVNRNLLFGSASPGGWAAGGEFLRRGFRFAEGHVFSEDVALPPKDQWYAFSFGVALYDVDAFLATRPPRAAGRAGRRGRLSQQAAR*