Scaffold Ga0126335_1011299

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126335_1011299

Scaffold Ga0126335_1011299

Overview

Basic Information
Taxon OID	3300012887 Open in IMG/M
Scaffold ID	Ga0126335_1011299 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Olavius sp. 1 OAHU.JWI-45 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5976
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Hawaii
Coordinates	Lat. (^o)	21.4686	Long. (^o)	-157.8184	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055336	Metagenome	138	Y
F094690	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126335_10112991	F055336	GGAG	VLAHLDELGPAFEIGLQTAERYFRHSELEPQAIEEEPMVDSVKGRRQVKADQDSDLLVVGRREESKKSVLTISPLVLLPL*
Ga0126335_10112993	F094690	AGAAGG	VRTVFRLDLKTDKESLLRTVFGSEFQTAGAEHRKVRFANVVVVKG*

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