Scaffold Ga0160425

Basic Information
Taxon OID	3300012886 Open in IMG/M
Scaffold ID	Ga0160425_1000088 Open in IMG/M
Source Dataset Name	Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 8 (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 8 (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	155069
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	94 (71.76%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

155069

Total Scaffold Genes

131 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

94 (71.76%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Source Dataset Ecosystem

Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Source Dataset Sampling Location
Location Name	USA: Berkeley, California
Coordinates	Lat. (^o)	37.82	Long. (^o)	-122.29	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Berkeley, California

Coordinates

Lat. (^o)

37.82

Long. (^o)

-122.29

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160425_100008824	F025048	AGG	MLNPTLITDAIASVLLSIPELYAAMGGRITAFHYRLGQEHRLAEAIYKMPAPSMLIVWEGTKGGSFDGQTIWKHRWGVYYRMGNAAGVAEPVGYEDLWWITCNCPPGGSGPNIRYLQLYPGLDIMDTPSIDHELDEDLIDRFKGLFIIPEIGDN*
Ga0160425_100008827	F031889	AGGAG	MYGDIPAAGITIRVPNPPKTAQLRLPTNEEMLERLDQQRSIRRTIGRRKSQTEFVPNLKADLDLFSKIRLDEDGAEFDEFEAGNAISKLSFCEVTDCQRAGDEYRVTLRTPFGETVHMVKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIEPAVDLYDSVVTKIEGYAASIKPADVPPHHKSAVVVELVQAIDDLDPALDPNS*
Ga0160425_100008828	F041367	N/A	VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGGSPLCA*
Ga0160425_100008829	F030458	GAG	MPFQARITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0160425_1000088

Overview

Ecosystem & Geography

Associated Families

Sequences