Scaffold Ga0138284_1342609

Overview

Basic Information

• Taxon OID: 3300012779
• Scaffold ID: Ga0138284_1342609
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1092
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017290	Metagenome / Metatranscriptome	241	N
F054664	Metagenome / Metatranscriptome	139	N
F091498	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138284_13426091	F091498	N/A	QLIMRVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTT*
Ga0138284_13426092	F017290	AGGAG	MATTVITGRDVGLSFTGGTDIQAQATNAVLTKVNDRQVYQTMDGEAYKTTNISATFQLDMLADWGKTSSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS*
Ga0138284_13426094	F054664	GGAGG	VANETIAYNKNDLRDIYKAFKLMDDQATEEARTQSAALAYFA