Scaffold Ga0138282_1007141

Overview

Basic Information

• Taxon OID: 3300012766
• Scaffold ID: Ga0138282_1007141
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada - M_140807_M_mt (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1015
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012124	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138282_10071411	F012124	N/A	MLFLLSTPEYTNAQSNTTKVKVHLRNGVAEVFNLHQDLMGRVDNDIVEIETNFENRTERSLFVVQDAVFIVSSQGLDANVETKGTSVYVYAKRAKQIGAGFSLDELSKQYEQKSSDLANEEQKLAVPGTDPDDRAINSKIFMLKDEVVFLKKVLQIVKDLRAS*