Scaffold Ga0157564_1016601

Overview

Basic Information

• Taxon OID: 3300012747
• Scaffold ID: Ga0157564_1016601
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES063 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 941
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N
F057095	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157564_10166011	F057095	N/A	YFKVGDLIKAESYPLQDVITFHNEKCRILKSKDIVTLEKVSIANKLLIKTLSDETRSALKEQLALVSKVGSTLTNLSLMYTYIENNDSGLQLEAKNRQWSNEYQET*
Ga0157564_10166012	F037570	GGA	MNIKKLDLLKIRNLKFRASQRQVIIDLLLKKKDLEKDLWKVSVKTLIILAKIKVRCEELERISENLQQTVINGY*
Ga0157564_10166013	F039941	N/A	MDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENMSLLIQLDLALNEAEILYENLIECRLLHARYRQQPS*