Scaffold Ga0157525_119732

Overview

Basic Information

• Taxon OID: 3300012737
• Scaffold ID: Ga0157525_119732
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES003 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015066	Metagenome / Metatranscriptome	257	Y
F036600	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157525_1197321	F015066	N/A	IERAALPASGMKIFTPKLGTQATVELTAEAAEFASTDTTVTFQEDNVVKFAGAGKLDLELVDRSDPSFLDLYLRELAASYAQKTDAYASKIAADGSSDSSSTTIYKALAKSIADSFGVMRQTPNNLLVATSGGNDDVDFAGLLGAVDTTGRPLYAAAAPQNANGLITQGSTNGTVAGLNLVVDPNYAGGTAGIKVGLVYPTMAMRFHESGTLQIRANVVANGQLEIGIYGYVAVVNRYPAAFRAVQVA*
Ga0157525_1197322	F036600	GAG	MAMALTTVSELRTTLGVGTLYTDAVLQEVCDASDAVLIPMLWTPNQFSVAHSNVPDIGTLYFNEPITEVFYVGQSVTITNSGTKYNGTNTITAVGEYSI