Scaffold Ga0157606_1162193

Overview

Basic Information

• Taxon OID: 3300012733
• Scaffold ID: Ga0157606_1162193
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 640
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001129	Metagenome / Metatranscriptome	768	Y
F014844	Metagenome / Metatranscriptome	259	Y
F059754	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157606_11621931	F059754	N/A	SDQLQIAQDFISSLTNDPNEDWTLSASVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT*
Ga0157606_11621932	F001129	N/A	MLGQGGTMEFINGAVSGKVYDFIVVNAAATFTVLTGTGSENLLTAYNLSGASISAGIVISGRNGGKITAVTLSAGSVIGYTFL*
Ga0157606_11621933	F014844	N/A	MIIGYVYGYPTNMLIGGLAAGVWGAFNARATADGATAAEAAVNGCLFV