Scaffold Ga0157625_1303883

Overview

Basic Information

• Taxon OID: 3300012729
• Scaffold ID: Ga0157625_1303883
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES157 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1299
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157625_13038831	F030767	GAGG	MATYKTKCRLCGKMTDHIERVITDNLPPYVKSLQCVKCGVMGIVML
Ga0157625_13038832	F029049	N/A	MSSVVKVVLDRSQEITAHRVGLERTITRNAEVQDASNFGQAYKNWHELVWQESEAAAAEIAVANYFGDYGFVPAIDNAHDTADVGENIEVKWTKHANGHLILQNRGPGRPNDVAILVTGFSPVYVLMGWMPVHMAKVPKYKHPYQDNYWVPRSNLFEMQYLKRSNYGDI*
Ga0157625_13038834	F007029	N/A	LVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTAQDMEKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELLAEAPRCTHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV*