Scaffold Ga0157625_1012499

Overview

Basic Information

• Taxon OID: 3300012729
• Scaffold ID: Ga0157625_1012499
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES157 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1728
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157625_10124993	F029017	GAG	MTEIGLITWYIVQLVLWAGPFGVAAFLAGIAGGAFYAGYSMRLKRTDKPMGAAKLDHIKYDILPDGTLGPGDPRGLEGPE*
Ga0157625_10124994	F018127	GGAG	MAKQKDNWIPWVIVAGLVLYAASQQPKGGGDPSKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIEAGEIANQEQWTKFISDNAGGKNREALDKVYSAIDKLDLPVTFAGSEAEIARINKEIASAW*