Scaffold Ga0157611

Basic Information
Taxon OID	3300012724 Open in IMG/M
Scaffold ID	Ga0157611_1098773 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES138 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES138 metaT (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3528
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3528

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010598	Metagenome / Metatranscriptome	301	N
F011064	Metagenome / Metatranscriptome	295	N
F024720	Metagenome / Metatranscriptome	204	N
F041586	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157611_10987733	F011064	N/A	MGIKILYFQKMARESVLDNFWQEFAAIEWASDMSLGDLFDVSLWTHKLCASLCDLHMISQAPRISQYDLNTVGANILGFVFNIYRCKMDQLNLTLEIDDHWVNFETQRDSEILKSIKRLQEILIANKIMSNEGSDRLRQSYTLCRYRADIQSDQDLGYELSCVLQFIAIKTQLTLRQLAFLRLKIINPTLFERQRVEKIGLFKPADSPASSPETEIEPPSKKAKK*
Ga0157611_10987734	F010598	N/A	MTTLTTPRRVIIFGGSNAKRIVPFLLELTKGKGIRIEDRTVSGHSLGDLRNFPKSTEVREKDFIFILSGENDIFKKHIKIHRRFGKVHKICLTKCVPNPLSSIQKLYENLKEKLKDLKCHKYVITNPYRHLYCCPEHYDVTYYGNILRAQNAANSCLIKTLKAAAIILKVEKIIGLNCKEKRKGYPDHMIDSVHLKQKFYLRAAENLCKIVSEKSSSC*
Ga0157611_10987735	F024720	N/A	MLVFIKLTVIFQLTKIQNFLSESALELASTDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINDYTTPFRVTKNMNLTDIFTTYSIQEAWVDLYCSKVSGLLLDKTDYPPVTITVDAEIDAARVHTPAAGSIPNNVLETHYVLGSTRATVVPSNGKIMSFFYKPVYNTSIDTIADGLASIIPHMSSVMCLKANIYPNTPKRL*
Ga0157611_10987736	F041586	AGGA	MLDQVNKEVALYKTLITEWRFKENAIPVAVPNNYTVNMSLDVDDVVRENLINCRRQKENLKQGFRFITNPIDLALLKFEHELLLAEIKSIRQEILTPLTNPLSLIDLNNLDEQSGSNPTILKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157611_1098773

Overview

Ecosystem & Geography

Associated Families

Sequences