Scaffold Ga0157612_1137818

Overview

Basic Information

• Taxon OID: 3300012721
• Scaffold ID: Ga0157612_1137818
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES139 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1609
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F075720	Metagenome / Metatranscriptome	118	N
F086589	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157612_11378182	F075720	GAG	MINQEDRNFKLFIGGLEMVLGLTKTAITILEYNLSGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFENHLIYLIQKPRDQWAQWQLKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLLS*
Ga0157612_11378184	F045530	AGAAG	MNNPSTMINSITEKLEFLNNMEEFYQKVQEMLHYLGIKSPSRPNFNYYAELIKQRKQDLAFARWTIQRQYRKWFMVQMNKTGLIKMYKSKEQIKKVYNTAITEEETHKYVDEEGPPRKRFSGIYTRFN*
Ga0157612_11378185	F086589	N/A	MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSRHGDGDEIFLSANTDTRRSL