NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157557_1025402

Scaffold Ga0157557_1025402


Overview

Basic Information
Taxon OID3300012718 Open in IMG/M
Scaffold IDGa0157557_1025402 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES050 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9035
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F046371Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0157557_10254021F046371N/AQMSENKLNFLRSQIAMFHPEWTKEQVHMEAIRVHEEANTIDDDDEGCLYCGS*
Ga0157557_10254026F036240GAGMPNESSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNFTNAVASGTLEKSLAYRLQIKGSSINISVYAKGKASQYFLARENGRRPGATPPPVSAILDWMRIKPIKLRDKESGKFQKPTEALKRQVAFLIARKIGRDGIKGWKAFDYAYENIWDEYESKVVAAYGKDFNATIENQLKDIK
Ga0157557_10254027F028175N/AMAITIHDQPYEYTPVGQRLMLVASSTNVANAGFRFVFDFGSFQVNVQPNAANKGILDLAPIFRESLFHDASLITTTNDVDLKSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGITKYLMSERNVDTHKWSEAAARGLSSNFVYIPTRLADWGVMYTPSATALLADSDFDIAVFSTYDNSDVLIDTVNVNLSNANDIVNVIGANPSNLILGGLDFTNVKYYTIQIGKEIAFPVYTPTSRVYCFYIVPDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSYSYDRKQYQKVVGTYNASSFDFNTFDRGVTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVYIINDDGTLTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
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