Basic Information | |
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Taxon OID | 3300012716 Open in IMG/M |
Scaffold ID | Ga0157605_1254034 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES130 metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 662 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012337 | Metagenome / Metatranscriptome | 281 | Y |
F048851 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157605_12540341 | F012337 | N/A | EYLIASDNVAADAITSGASASGSTWTFNSTDPSTLFAALYDAATDILIATNFLPDHIFVSPNVWKLLGQQLDGDKRSVFPYTAAAGLMGVNAPGTANITERNTFNPFGLNLVADNNFATNTMVVARGTAIEFYEQVRGLMSVELPSTLGRNFSYAGYVSTFIADADQVKSIIVSP* |
Ga0157605_12540342 | F048851 | AGG | MATYSVTNKYLIDNYAVLQLLTPSEIAVGQSITVAGVE |
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