Basic Information | |
---|---|
Taxon OID | 3300012716 Open in IMG/M |
Scaffold ID | Ga0157605_1219625 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES130 metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1770 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001599 | Metagenome / Metatranscriptome | 665 | Y |
F001706 | Metagenome / Metatranscriptome | 648 | Y |
F098902 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157605_12196251 | F001706 | N/A | IDHTMCDEDCFGCKARGLQLNTGDAGRDIPDKKWNSELGAYRDARRQGIQPAGTRMHDIEQAHKASENLGQAYDADSMPKAKDITPKAVEVMKEIGQI* |
Ga0157605_12196255 | F001599 | AGGTGG | MQETISVAWCDNGMVDGKFMQGVTDVLLKSGVEFKSTLRSQGNQIARQRETVINYWFDKTDTEWLLWVDSDVVISPDKFKLLWDNKDAQKRPILTGIYFTTDTPEEPLMIPMPTAFEFVDDENGGFGLKRVHPLPENQLIQIGAAGMGFVLMHRSVVEKIRKELPDAQLFMEMGRGTKFIGEDIYFFALCEKVGVPLWCHTGATVPHMKRFSFDEHYYKAFFGAPKEEKKSNLVLPKRYTKG* |
Ga0157605_12196256 | F098902 | AGG | MALGKAGSSLTQELNRLAGITNVANYKDEQGAANAWAGTTGLATVGALNIKVSAA |
⦗Top⦘ |