Scaffold Ga0157599_1146642

Overview

Basic Information

• Taxon OID: 3300012715
• Scaffold ID: Ga0157599_1146642
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES122 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1313
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055458	Metagenome / Metatranscriptome	138	N
F088320	Metagenome / Metatranscriptome	109	N
F100445	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157599_11466421	F100445	N/A	MTPIISEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMVEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNYMLYLKNIVFNPDPNDLIKFIKPLQIIKLNIKESRVLMEGAL
Ga0157599_11466422	F088320	AGAAG	MSQVSENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQADPSNGKISVAKEAVKVMADKIKEVLDLDELRLEEISLPNNDTNN*
Ga0157599_11466423	F055458	AGAAG	MSNSLTNIVNKTMATFIKGSMCEILALISAQQREMIKELEKFPLSKRILVENEVDEATDKLIELLTELQLTFVIETETEDS*