Scaffold Ga0157572_1166486

Overview

Basic Information

• Taxon OID: 3300012703
• Scaffold ID: Ga0157572_1166486
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F055422	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157572_11664862	F054566	AGG	MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKIKQTNKDAN*
Ga0157572_11664863	F055421	N/A	MEEFTNPYKETNIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMARIIENLSYSMTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPNGEEIESNLIKLTIGY*
Ga0157572_11664865	F055422	AGG	MNNWRFRRRTFPLTRRETHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILVTRLYYAVMCLKRFFPEWGISMQPHHIRNASPPNRDRNPPDRNRDSLDIDNYSETEPLITEV*
Ga0157572_11664866	F062460	N/A	MNLEKSIIQAVTTAVKEIRQESCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRSISHE*