Scaffold Ga0157559_1040322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157559_1040322

Scaffold Ga0157559_1040322

Overview

Basic Information
Taxon OID	3300012694 Open in IMG/M
Scaffold ID	Ga0157559_1040322 Open in IMG/M
Source Dataset Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES054 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1049
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013610	Metagenome / Metatranscriptome	269	N
F018161	Metagenome / Metatranscriptome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157559_10403221	F018161	N/A	ARQQVVRKIYRVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKSHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKNHNGN*
Ga0157559_10403222	F013610	N/A	METSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPHWKLISWPHITIGRIFCSIDAIVIEDKWDCETNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKSRGYRDTLEELERLIIEV*

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