Scaffold Ga0137397_10069009

Overview

Basic Information

• Taxon OID: 3300012685
• Scaffold ID: Ga0137397_10069009
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2556
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009615	Metagenome / Metatranscriptome	315	Y
F047786	Metagenome / Metatranscriptome	149	Y
F099023	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137397_100690091	F099023	GAGG	MQSPKRIEPVESLAEQADYRSPQRTIPRLKSFDARIERREPLPVQIYLANLEEPRARERTVTEDVSPHGARVLSERCWQRGEVPLVTPLMGEFPKHARIVYCYPQPKIGYFVGIQFEGPPFKWHV*
Ga0137397_100690093	F047786	N/A	MVEVRALSTDFRPGDIVRHKSGDQDFIIIKFEDDSVASATKKLATCGRFEGQSFHQETIPVEMLVFVNRQFGT*
Ga0137397_100690094	F009615	N/A	MPLDSILVSASIVSPRQDDWHASPHCVLGVWFICLGNIARQIFADREEHMTRAAGELQEDVHSLGESSAVGGLLCGLPRRIGRREARAPLSAPLWLTSLQKPGVFEIVPTENVSRFGIQMVTQEFWEPAELVLVSSPPGFCVQGSVVYCKKLPSDDYILGIRLDAPVEHWIEALGFRGS*