Scaffold Ga0137397_10031233

Overview

Basic Information

• Taxon OID: 3300012685
• Scaffold ID: Ga0137397_10031233
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3794
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009904	Metagenome	311	Y
F039362	Metagenome	164	Y
F070478	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137397_100312332	F039362	GGAG	MDSALKPLKAALEAIRDMAANALTQIDQPQETRSMRWKCKECRYVKHFTKPALLETAGRCPRCKSTEFTPIP*
Ga0137397_100312335	F070478	N/A	MWTNSRKKNENQVRIYDPDDIEWNAEHQVCRFKGTTLSAAQQFAVKLCKRIKQLGGELPVNWLDCELIYLERFAQKLQRRLDRKVIGF*
Ga0137397_100312336	F009904	N/A	MVAIVASIISLAATPTPSPARVTLNNLVGMWITVRGDCREGQHLLSANGDYRMWCFDSISDGKWFLRGQDKIVVRYDPKKSDEEIITVLRFEPYSDRTFLYVRYQDGSREKWMK*