Scaffold Ga0137398_10002555

Overview

Basic Information

• Taxon OID: 3300012683
• Scaffold ID: Ga0137398_10002555
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7837
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029066	Metagenome / Metatranscriptome	189	Y
F043847	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137398_100025552	F029066	N/A	MSSLSGTVALPQAVKFIRRAADPLPLANMLVSRASCTRDSGSAVPAPHAATAAGSDLGSSCDTPPVNVPSVNPCNASSPAQITCHAPRDLVQEDLATMGKAGQKILGARDRVLEILQTENACSAWFREKDSNPANTFRTLSFALDRKGEEFVLESKNPGDMNIFRSPYVARVFQGEGSCATITINMTGAFFSPMARVVEIQKEGGFWSLRGVRVLGVGPYAGDSLRAQILALLHEFGHLIDLLPTDEGDQDGRSVRNTSEVLRFCRAEVESKSKRGALSAAR*
Ga0137398_100025556	F043847	GGAGG	MPWACRGFAVVFLAFGLSLISGKVAHTQDQSITSSTPMARPKVIPRLCGDRRPVPGPQRKSGSVREADRSDKLCAEVAFDRSATASLGPGDVREKANEDPVLEELKAMGEQGLVIERAREEVIEILEGQNRCAAWFQQAEPEVARKFQSLRYGIDESGPQYTLKLQNAAGGWLYQQPYVASSIEDASTGSTITINGKGAFFQLRSGVRIVPKDGGPGGLSASQLLHLDLYLGGTLEAQVTALLHEFSHVVGLLPADGGSGFGAELSTQNTQIVLRHCRGEVEAAGKHKGLFLNPGTGSFHVARGDKANF*