NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136611_10004441

Scaffold Ga0136611_10004441


Overview

Basic Information
Taxon OID3300012682 Open in IMG/M
Scaffold IDGa0136611_10004441 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9832
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0471Long. (o)164.011Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061929Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0136611_100044412F061929N/AMFMNNLTARLFSILLILGAIVAGGAGLAAAQDSTPPVAPITVAELAPGVTAEVFGGSPSARADGQTLYVARFVFQPGAEIFPHGHPGTTLLGVESGAFGWTLVSGTAHVIRGSAAGATEPVEEITVPGTDVILNPGDTIYYEDDVVHTARGAGDEPAVIAATLLLTAGEPLLMTPEQMAGMNMDMAATATP*

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