Scaffold Ga0136612_10124384

Overview

Basic Information

• Taxon OID: 3300012680
• Scaffold ID: Ga0136612_10124384
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1310
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0456
  • Long. (^o): 164.0158

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065289	Metagenome	127	Y
F088009	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136612_101243843	F088009	GAGG	MFILRNKQQLAKAIDNARALHPKVRMVEFGEYLVTGSTGNTYTVLCYRAGGEKIVDCNCPSRVPCKHSAAAIALHVHVAARRGH*
Ga0136612_101243844	F065289	AGGAG	MQTNTNTPTQAPAQKLERVRERVRTVTRAVQTTEGRLLDFDTADDIMRALHTAARELEELIVTVAVMQRREAR*