Scaffold Ga0136615_10053056

Overview

Basic Information

• Taxon OID: 3300012678
• Scaffold ID: Ga0136615_10053056
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2035
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0557
  • Long. (^o): 163.7304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002196	Metagenome / Metatranscriptome	584	Y
F003251	Metagenome / Metatranscriptome	497	Y
F038469	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136615_100530563	F038469	GGAGG	MAALRCTCEQGTNLWGEFWWIEGEHRWMFFDDEKTSETYAEQLTHCRGCGRSLERKGLRATTPSLRP*
Ga0136615_100530564	F002196	GGAG	MEHTTEDARALIRAAKELHAERHGAHTFVPGTYLPFLEAAKRTGIRSDRQRYHDALEDLEYEGAIEWDTSARYARGYKHYLITRRGLDEPGRAWGGAVREGQTRLF*
Ga0136615_100530565	F003251	GGAG	VQNKTYTTEKEAKKAAARAYRPAIVRLPNGRYGCFHAGDVLPQGARPVSRWGTNQWRAYD