Scaffold Ga0136615_10018460

Overview

Basic Information

• Taxon OID: 3300012678
• Scaffold ID: Ga0136615_10018460
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3596
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0557
  • Long. (^o): 163.7304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011968	Metagenome	285	Y
F048770	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136615_100184601	F048770	AGGAG	MRVLVTVSPRIYREAVAFSLQSSRPDIEVRAASPKDAELELAGFRPHLLVHNDIDGLGSEAMGSVLCRVEVPYSDGMDARVRTGENVSQVSDMSTEDLLRTVDVTATVGGLH*
Ga0136615_100184607	F011968	AGGA	MSQEHYKDLNLTPPEGGYELYRHKNAEQMRTQGWSGLYWARESAPGDYEIRAVTREGEGYSYPGGVFSKEAFERLYEKVDDTQPQSST*