Scaffold Ga0136615_10000004

Overview

Basic Information

• Taxon OID: 3300012678
• Scaffold ID: Ga0136615_10000004
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88899
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (56.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0557
  • Long. (^o): 163.7304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018492	Metagenome / Metatranscriptome	234	Y
F063249	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136615_1000000458	F018492	GAG	MADDWLKIDRGLFESRDGRWRISNPWRLSTELRHRWLVAQRRSDGAGWNMHDGDHPTLQDARAYIAALSDAVPPANCSAHQRERR*
Ga0136615_1000000469	F063249	GAG	MSDDPTPRLSGDEVLALTFAAHRQLTRWSNKPKLNPHQHGQHTALKSAVRVLQNHALAHGCELRAPGAQDGDG*