Scaffold Ga0157216_10418409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0157216_10418409

Scaffold Ga0157216_10418409

Overview

Basic Information
Taxon OID	3300012668 Open in IMG/M
Scaffold ID	Ga0157216_10418409 Open in IMG/M
Source Dataset Name	Arctic soils microbial communities. Combined Assembly of 23 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	589
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Norway: Midre Lovenbreen, Svalbard
Coordinates	Lat. (^o)	79.1005	Long. (^o)	12.15611	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007502	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157216_104184091	F007502	N/A	MRATYRGRSMRSFTTLGQTARHDLVRFVDSYASLLVLLLANFFLLQLVDDPRWGALGSTFLSALALVVAISDPAAGHT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.