NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157216_10329615

Scaffold Ga0157216_10329615


Overview

Basic Information
Taxon OID3300012668 Open in IMG/M
Scaffold IDGa0157216_10329615 Open in IMG/M
Source Dataset NameArctic soils microbial communities. Combined Assembly of 23 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.1005Long. (o)12.15611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006620Metagenome / Metatranscriptome368Y
F022920Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0157216_103296151F022920N/AMVRHVIHQLLVTDVALDKLGARSISAEEAQQIPRNRHVVARNPRAGDVNVTRRLLIGRTDGGRLLTLVIERTVDPTSWLIVTGWSSTVAERKLLEANR*
Ga0157216_103296152F006620GGAMSSDPWTDSDPQPGDFDADLATLDPRYVEHHEGRPDARLVVLVGVEGEDARRLERIAQASGRTAADVVAALLRDADRSLA*

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