NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157216_10231155

Scaffold Ga0157216_10231155


Overview

Basic Information
Taxon OID3300012668 Open in IMG/M
Scaffold IDGa0157216_10231155 Open in IMG/M
Source Dataset NameArctic soils microbial communities. Combined Assembly of 23 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)867
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.1005Long. (o)12.15611Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084382Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0157216_102311551F084382N/AVGVPLCGWGCSIGPSEATFNAGFSSITTDPSAAGPPPPDPVQGYVHEWLHQVEAVYRTLGVSEAEVPPLHDAAAFTSTRPRDEAPFGRSYAEYHDGGAGTWAPWYRDWMTGRLAPIDTAKAAAASEPNRIAAVAPI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.