NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157216_10034554

Scaffold Ga0157216_10034554


Overview

Basic Information
Taxon OID3300012668 Open in IMG/M
Scaffold IDGa0157216_10034554 Open in IMG/M
Source Dataset NameArctic soils microbial communities. Combined Assembly of 23 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2572
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.1005Long. (o)12.15611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019957Metagenome / Metatranscriptome226Y
F025631Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0157216_100345542F025631GGAMWWTVGWAVGAVVVALVAILLITITLLARKIGGEAQQLVTDLDSIASKTRPLHDVGRTNNAVRTITRGLRFARGGDPAVDRYSTSPGWRP*
Ga0157216_100345544F019957GGCGGMMSDITVPVLALLSNNQSAWLYTLLAALVVLVVVIILLEGLKRTVNKLEADIWRTWVSGKDVVAHTATTYLLKNTRESADELVEELSHHG*

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