Scaffold Ga0157208_10013817

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10013817
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1103
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063624	Metagenome	129	Y
F082586	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_100138172	F082586	N/A	MKEFWSWVVIVTLLIFCIMALSFAIVHVQKQLNKAEAIVQRLEEKEKKREKPRTEPKPVDADGGL*
Ga0157208_100138173	F063624	N/A	VDPISLLLMAQSAVGAIRAGCQMLSEGKAEIGKFKKQVEGGVADARAIYNEVTGIWGWLKGLFGEKKPQPTVLAPVVEKAAASAPTKKKVAEPEPELSYEEFQARAVHEICENLKVYFEAMRQLKEHCRELDEEALTTDKVADSAIDRIEIQWQMNQLSAQLKQAMIWGTPEELGLGAMYQEFLAKYDEILEEQEAAREVKARKERALKWQHEHRQEILIYKLVYAVAILFGFLETMGLYLAL*