Scaffold Ga0157208_10001320

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10001320
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5703
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F019325	Metagenome / Metatranscriptome	230	Y
F039631	Metagenome / Metatranscriptome	163	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000132011	F093845	AGGAG	MIKVTLTSTSGTTKGMSFDTKENIEEFIKQYSAILPIGTAVCIDAPLIGIHSGWIQGTKQALV*
Ga0157208_100013202	F000808	AGGAGG	MEYLYSLTISYDGKLVNAVKSVDLLAIVDAWNKCVDYGDAKEYATYNLSDTSGKMYTKTFYRNGNVEVK*
Ga0157208_100013203	F000447	AGG	MGYVEIFRIDNEGAGWIDLSQANSDELFNLEVGLLNEGALFSTKEAN*
Ga0157208_100013208	F019325	AGGTGG	MTTLTEELFSTIVHEYHNGGVKSSYGLDAYTRKEVLMYLIRSKGCQCINCI*
Ga0157208_100013209	F039631	AGG	MNTLDKNTIKHSKFGHLDLNARITLAATMVANGEVVSFRGASADTYNKVQALANKIKLEREFPQCPCGECD*