Scaffold Ga0157208

Basic Information
Taxon OID	3300012667 Open in IMG/M
Scaffold ID	Ga0157208_10000568 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012667 Open in IMG/M

Scaffold ID

Ga0157208_10000568 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10434
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10434

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Keswick, Ontario
Coordinates	Lat. (^o)	44.22385	Long. (^o)	-79.4212	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Keswick, Ontario

Coordinates

Lat. (^o)

44.22385

Long. (^o)

-79.4212

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F020348	Metagenome	224	N
F025481	Metagenome	201	Y
F033030	Metagenome / Metatranscriptome	178	N
F034181	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000056812	F011074	N/A	MQLVGINNPGEVKLAILEDWIRTEYGGFTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDRLFNPLSVFTKLNSTGIKVWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKIGKVSFS*
Ga0157208_1000056815	F033030	N/A	MEQKKWSAGAWKKTTAKGEVINFTINDVRYSMWANTYKTDENKQPDYKIYVNDFKPKEDTEGLPF*
Ga0157208_1000056819	F025481	N/A	MFQYQRYGNILIDGDRSTTNPYDPALLPKNYDYEDDDYTFTRWVENNAELELLKNELYED
Ga0157208_100005685	F034181	N/A	MNAIVYLNYKDRNINTLFENIKNAGKHIDIVTIINEEGIAFATNKGLRNLHFDNIDYVTIMGNDILEPDNWLQIRNDFLQDKTIGICSIPLHSTGNDTADLIGNFTITKETIKRVGAFNQELDPYGAIDLDYCTRCRAAGLHTKFIKEYTANHIEQNSIDAYGYNKNELVQKTWNLHSNNVSGYTNGNKTYYINL*
Ga0157208_100005687	F020348	GGA	MEIEHRNFLDDHVSNWHTVQNGYVRNIDLDILKMYEHIYRKYMSADFILTVWCGNCIFDMIKRLYTWYEEQPKPKNKKNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157208_10000568

Overview

Ecosystem & Geography

Associated Families

Sequences