Scaffold Ga0157208_10000362

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10000362
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13526
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F021988	Metagenome / Metatranscriptome	216	Y
F042904	Metagenome / Metatranscriptome	157	Y
F072349	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000036214	F042904	GGA	MAEITVMDEIIGEVAEDLYKKWISAMPNEEKNQQAFSAMSKNAHETTLFVIQQFMNKFNAAAEELKGQD*
Ga0157208_1000036220	F072349	AGGGGG	MDKVLCYSCNKSKNKLSAKKSSLLNISLLLCESCTTSKLEPRWVVVLAGRQFGSEHVKEHIAKKKYVGDEITASELLI*
Ga0157208_1000036221	F011394	AGGA	MFIDKNKDHFKHGINQWTGEPNKPVFYNKEMATKIRQLQRPVPGLEMDIVKYPEFLAIRLYEDNFAQYDGSAKVKVIEYIEMVKNILESYGVRVELEGKPGGKR*
Ga0157208_100003625	F021988	AGTAG	MTNSFKKEDGTGTVPPQNSGAAAGAVTSREATRKHPRQGIKIDQNKHGIRRETSLIPKPPKKTGRKKV*