Scaffold Ga0157208

Basic Information
Taxon OID	3300012667 Open in IMG/M
Scaffold ID	Ga0157208_10000356 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012667 Open in IMG/M

Scaffold ID

Ga0157208_10000356 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13560
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13560

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Keswick, Ontario
Coordinates	Lat. (^o)	44.22385	Long. (^o)	-79.4212	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Keswick, Ontario

Coordinates

Lat. (^o)

44.22385

Long. (^o)

-79.4212

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y
F022651	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000035610	F022651	N/A	MTVTVKDNSDLLNFLVTQAESRKDWFGFVQQRITAVALAHDIARHHADKMTPEQVASYALELNEVIYHKIIKTTR*
Ga0157208_1000035614	F000934	GAG	MSLQNILSISESVGINDQRFIGQTVSRNQKITTSEILTVVPFAFELKPMNYLLYSRNRGLLNSLRIPDKALTQYLNFGSTGWLNYIQYQGDMTETQIENCQWQTSSANTTLVLGSLPSISSSKYLFRIGDFVQVGLYSYIVTADVVRGPNPTVNVPVHRSLIDALTSTVPCVAGEFGTTVSMGGDTYTGVTFPVVLRDYPTYTLMPITNDSFINWSGSFKAFESVL*
Ga0157208_1000035615	F002085	N/A	MNVIAPVDGTSSIRLADFVRVNTGGDIYRFTTAPSDTLVTAVDSLPFSAVGTLMKVGDVQRDIKSTANETSVTLIGIDTAMLGWVLGQTVKGSQIEMWHGFYNEQNELLTSGGSGGLYQFFSGVITSFTISETWMEETREYVGAITIAASAIQLILQNRIAGRYTNNNSWQFFNTGDTSMNRVNFIETINYQFGKNT*
Ga0157208_100003567	F002997	N/A	MAIARFENIAVNNLTFSESGFGEGVTTQTKWFDTRARVSDVANSLRIADKYRLYQELTQFTLNYTPNMKQIVDGQDQYSITWRGQDWRITDVREANDRMTVMFLCYRNDPVTAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157208_10000356

Overview

Ecosystem & Geography

Associated Families

Sequences