Scaffold Ga0157208_10000081

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10000081
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31599
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (26.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F011078	Metagenome / Metatranscriptome	295	N
F033349	Metagenome / Metatranscriptome	177	N
F071026	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000008115	F011078	N/A	LNKADIILELSKADWLRKATKNIAKNNELARELYQFYFLTILEKPDEQIEKIYRDGYIQFWSIRLLYLAINGNRHPFGNSRIYDQHDVYELDFAEEIDLLDEREQAEGIELERINKINQVTESAYFYERELFKLWCSGMSARAIHRKTDISVREVLRVIKLMKDRCTQK*
Ga0157208_100000812	F071026	GAG	VALSITQQPNTYAPGYNDTNFVISESSGGIYSKDNFKFIAEVKQNTTSLAKLKAPIYYGSTNKGVFNIGRILENYISFDWNYNDTLASGCVNSSMDYKVEFGYEYSASATGSITEFTNLTSATGTVWNAALNPYDLVNYSGQYTMDGDGKFLTPIRSKTIHRTQKDWLYAIRDTATSAVITYSDASTQTLSLPSSKIVRIPSGSQLSIPGAATYYDIQLKLGATVLSETYRVNLIEECSKYDTTDLFFLNSLGGFDSFRFNRVRRDTYDIARRQFSANPYTLGASYGYETSSFKTKTYDTNMMHKVKLFSNWITEAQSQWLLDLISSPVVYAYDGTLVAVNIDTTNYEVKKHIQDNAFLLELDITYSFDTKRQRR*
Ga0157208_1000008129	F033349	GGAGG	MIEATINGWILTMGGDRYVYIDKQVDDYLLENHFDELEPYMIKRDVYFGGCVETNLVGIETERFFYLEPDKFTIIFMCGHKTNFL*
Ga0157208_1000008131	F002909	N/A	VATIDLDKLPDALDTYLGDASEGSLLQQIIIDWWNKKVIPPIWANLDNKNINASSVLRQSFVPGEITKTPTSINTILLAEDYWEFVEYGRKPTRNGHIEGTPYLWQSIKEWMAFKGIKPPQTMTYDSMAKAIANKIHRRGTKAQPFLEDAFTESIQMELVNELNARFGDLIFSEDIKL*