Basic Information | |
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Taxon OID | 3300012667 Open in IMG/M |
Scaffold ID | Ga0157208_10000047 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35927 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (65.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Keswick, Ontario | |||||||
Coordinates | Lat. (o) | 44.22385 | Long. (o) | -79.4212 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000934 | Metagenome / Metatranscriptome | 828 | Y |
F002085 | Metagenome / Metatranscriptome | 595 | Y |
F002997 | Metagenome / Metatranscriptome | 514 | Y |
F043944 | Metagenome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157208_1000004715 | F043944 | GGA | LRKQVETALIFNGHTHETIAELDDVTMANLQTMYADGLLGNRGILEVLSALTNGVFNYMRPSNSPAYKLANIMGRAYDYVYPPQPVSKDAVSESLLVFMSQAPGFSKDKFEVKHG* |
Ga0157208_1000004717 | F000934 | GAGG | MGLTDILAISESVGINDQRFIGQSISRNQRISTSEVLTVVPFVFEMKPMNYLLYSQNRGLLNSLRVPDRALEQYLNFGSTGWINYIQYQGDMSSVDLAACQWQTSSANKTLVLGNLPTMPSTDYIVKAGDFCQVGRYAYIATADVQRGGSGTTEVNIPVHRSLITPVLSAENAVIGEYGTTISLGGSTYTGVTFPVILRDYPTYTLVPMTNDSFISWNGAFKAMESVL* |
Ga0157208_1000004718 | F002085 | GGA | MNIITPVDGTNNIRHAEFVRVSTDTGIYLFSTAPYSITVSAVDENPFDGLGQLVNIGDATRDIKSTANETSVTLIGIDTALLGWVLGQNVKGSLLEIWHGFFNTDNELITTGGTGGLYKFFTGNISTFQISEQWDEENKAFLGVITVSASSTQLILQNRTAGRFTNNNSWQFFNNGDTSMNRVPFLESINYPFGKGAKANS* |
Ga0157208_100000479 | F002997 | N/A | MAIARFENITVKSLTFGKSDFGEQSTTVTTWFETRARVSDVANSMRISEKYRLYQDLVNFTLNYTPNTRAMVDDQNLYSIVWRGKDWRITDVRESNDRMSVMFLCYRNDPETAV* |
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