Scaffold Ga0157208_10000002

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10000002
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98325
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (72.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029410	Metagenome / Metatranscriptome	188	Y
F066582	Metagenome	126	Y
F076859	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_10000002116	F066582	AGGA	MTDKNYKRLEDGPMDEIDAAVWSGDMFHNRENIEAFREMMARWERGLKEAEAIVSELEL*
Ga0157208_1000000258	F076859	GAGG	MAKNFDIKRSMNKDLVYGGLLELAKNPRVWYESAVSPDYSHLTEDGKKAIIHVVENMFRGLQQIHAQEIKEEAKRQTLESLK*
Ga0157208_1000000286	F029410	AGG	MNLHFNPEWTDIAISVSGGADSALLAYMVCEAAYEQGATIHIINHVRCWKTKPWQQDDADAVYQWLFQRFYHTKFKRHTNFIAPELEYGNVGPNLTDEYGKKVSGDNIQQRAYAEYICNKYDIDAYYNGVTRNPQLAFANGMVERDITPSEANRHLEVMQHMGRWAIHPFRFVDKSEIVKKYLELGIMDLFNRTRSCEGTVAGLDYTSYKKGQYVPVCGTCFWCKEREWALNSNVPTLEIQP*