Scaffold Ga0157498_1019371

Overview

Basic Information

• Taxon OID: 3300012666
• Scaffold ID: Ga0157498_1019371
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1061
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001781	Metagenome / Metatranscriptome	635	Y
F004666	Metagenome / Metatranscriptome	428	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157498_10193711	F004666	AGGA	MTTKREYLTSKGITVGKRGRFSSAAKNALAEAEKQGLKFTAEAPTSK
Ga0157498_10193713	F000441	AGGAGG	MQQSDIYINEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMPND*
Ga0157498_10193714	F001781	AGCAGG	MKPEDKDKLNKCLEILDSTDLGLSLVWLWTWSTINNILEDETFKANVTKDQMWDNLCEAVSAGQGFSLEYGAEQHHEDVQEWMLNRDYIVDTMFEEEEDEDATE*