Scaffold Ga0157498_1007169

Overview

Basic Information

• Taxon OID: 3300012666
• Scaffold ID: Ga0157498_1007169
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1811
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049442	Metagenome	146	N
F076079	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157498_10071694	F049442	N/A	MNKENLEQGLTKLLKTFYTKKYDRDFSDLTVVLDEYEEDADDMDNEGNWVSAESYYFKVYSNNFNGLYPQELYDLARELFGNIIGSKNWIDIEFGKYPL*
Ga0157498_10071695	F026552	N/A	MELTNVIEKLMNRDSFLNLLDNDIIEKFEVSASPFESKILVVKMFLNATKDELVGTEKLTPKLSEYELRDKLYKNYNLDPAWWQASIIPNKILKPLVGKDYFIKILLFVLDKNGNHIMTEN*
Ga0157498_10071696	F076079	N/A	MKYLITENQKENVIKKYILSNFDKVDDVWFTNRSVYYGSGPINGKDRGEEIIINVLVNNLDDELTKPNLFELKQSIISKTDKTFNLGYNRYGGGWGFSFSQKIIDKF*