Scaffold Ga0157498_1006999

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157498_1006999

Scaffold Ga0157498_1006999

Overview

Basic Information
Taxon OID	3300012666 Open in IMG/M
Scaffold ID	Ga0157498_1006999 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1833
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.6244481	Long. (^o)	-80.9227115	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053831	Metagenome / Metatranscriptome	140	N
F062703	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157498_10069992	F062703	GGAGG	MLKRKIIDNKSKTGMMVGYIHHSAYVVAVEPGWSITPRAMAKLLQDRYSTKEAAIQLVDSAVLVPVFRKEDYEYVEGFGDVLESNLNFHGHNLRTHVGHLFLFMKGAWQYSDNAIDWDPISTVFKNNSGVSFAGVRDAVEATA*
Ga0157498_10069994	F053831	GAGG	MSNWQKLNYLGDKCKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIEEAVSVARHNLKQMADAMQERVTA*

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