Scaffold Ga0157498_1002780

Overview

Basic Information

• Taxon OID: 3300012666
• Scaffold ID: Ga0157498_1002780
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2984
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035757	Metagenome / Metatranscriptome	171	Y
F056606	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157498_10027805	F035757	GAG	MNKFAVVLSSLVDGATVSIQVLVNSDMSAEQLTTYYKCKNITISDVYVEQL*
Ga0157498_10027809	F056606	AGGA	MTIRAQQILEVTLPYTLRPKSKDRQKVIAVAIREVADRLCVDLGELECPIDKLREIADEVEAL*