Scaffold Ga0157210_1012200

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1012200
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1488
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060908	Metagenome / Metatranscriptome	132	Y
F078705	Metagenome	116	N
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10122001	F078705	N/A	MYIAVDAIANEDDPKLSYLMFPYDEDFLDAIEENLKEIRVENEITFSLDDVLLIRGEFHYVRKKVTMTDISEHRYCIGRNTEKIPQLQNSKLHVANDYFYFSGYRKATKNDKTSLKFVSENFNLVTID
Ga0157210_10122002	F093847	N/A	LTINLRKTFARVVYFIEQTNQGKSKETILKELDLSEDEFQFLLNIMLSFSALKDNEATISSLDISGTVFIGGTYVTINNKDVISL*
Ga0157210_10122004	F060908	N/A	MTRKLDYTVSENIKIRSKNRIHIPKKYASYIGLNQGHVAHVTNLNGSYVISVCPTPESKKYMVDKDGAVRFPVQKNEYKIMIADSVVVIL*