Scaffold Ga0157210_1006948

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1006948
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2166
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F009531	Metagenome / Metatranscriptome	316	Y
F020910	Metagenome / Metatranscriptome	221	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100694810	F009531	AGG	MTQQVAIYEMNYSCSPGGVDCWETTIQGYGTSTTASDFKTAGQALDWVLDRYPDEVLELVVTSLPAYEKEYA*
Ga0157210_10069485	F020910	GAGG	MWSKYTFICDPDECDAMVEFTARDGFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPSKVVKINTNPYN*
Ga0157210_10069487	F092053	AGGA	MKIKISKEHKEELQDQASQIVYFEASMSDEDDAVKGTYLRLVEIYKVAFEAGAKSK*
Ga0157210_10069489	F007691	AGGA	VNTINDLINEIYESNFSHLEFEENMGGQDCDCHIHTTLNTIAHYAGIEVG*